PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do004021.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NF-YC
Protein Properties Length: 278aa    MW: 32170.3 Da    PI: 7.3413
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do004021.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC77.71.6e-24110208499
       NF-YC   4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                  fw+k+   ie  + f ++++P++r+kk++ a++   m++ ++P +l+kace+f+ el++r+w+ a++ +r+ +  sdia+a+++ + +dfl d+  ++
  Do004021.1 110 EFWMKKqqeIEAIEYFDERDIPMTRVKKVICAEKGKMMMTFDTPSFLTKACEIFVQELSFRAWMCANSHHRNIILDSDIAEAIASIESYDFLNDVLHTH 208
                 799876567999999*******************************************************************************98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008084.6E-8129192IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471136.86E-15130205IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.9E-19131205IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDDPVSRDRL FKKAWMIPCK NSIKADPATG IRTYESILFV FLCLGKSFLT PPPIIDKQHS  60
LFDYDLLFHH IIVVEVHLSR PRNKEMDRPI YIRTLPRTPV PLAEQQMVDE FWMKKQQEIE  120
AIEYFDERDI PMTRVKKVIC AEKGKMMMTF DTPSFLTKAC EIFVQELSFR AWMCANSHHR  180
NIILDSDIAE AIASIESYDF LNDVLHTHQK EHNSTPHLKS ANKPHHIKLI DQPSASCQPP  240
SDQYPTPQFI PQSAGYSPSV RIPPPLPPTN MLIRCLYP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008662484.12e-77PREDICTED: uncharacterized protein LOC103640778
TrEMBLK7TX383e-77K7TX38_MAIZE; CCAAT-HAP5 transcription factor
STRINGGRMZM2G052499_P017e-77(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91742145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.14e-19nuclear factor Y, subunit C1